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Crystal structure of MDLA N225Q mutant form Penicillium cyclopium
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 0.02M Zinc Chloride, 20% w/v Polyethylene glycol 3350
Crystal Properties Matthews coefficient Solvent content 1.79 31.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 33.33 α = 61.27 b = 44.52 β = 68.65 c = 44.76 γ = 78.17
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-11-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL19U1 0.9785 SSRF BL19U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.62 37.32 96 0.076 0.032 0.998 21.4 6.2 25794
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.62 1.65 96.6 0.151 0.066 0.984 11.5 5.8 1340
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.62 37.32 24482 1299 95.95 0.1367 0.1351 0.148 0.1663 0.1748 RANDOM 7.547
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.07 -0.4 0.04 0.78 0.61 -0.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.77 r_dihedral_angle_4_deg 13.725 r_dihedral_angle_3_deg 10.901 r_dihedral_angle_1_deg 6.437 r_angle_refined_deg 1.51 r_mcangle_it 1.009 r_angle_other_deg 0.984 r_mcbond_it 0.614 r_mcbond_other 0.596 r_chiral_restr 0.098
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.77 r_dihedral_angle_4_deg 13.725 r_dihedral_angle_3_deg 10.901 r_dihedral_angle_1_deg 6.437 r_angle_refined_deg 1.51 r_mcangle_it 1.009 r_angle_other_deg 0.984 r_mcbond_it 0.614 r_mcbond_other 0.596 r_chiral_restr 0.098 r_bond_refined_d 0.012 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2067 Nucleic Acid Atoms Solvent Atoms 245 Heterogen Atoms 13
Software Software Software Name Purpose Aimless data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction iMOSFLM data reduction