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Pseudokinase domain of Human Tribbles Homolog 1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 290 0.1 M Bis-Tris, 2-3 M NaCl, 0.1 M Sodium Citrate and 0.01 M reduced L-Glutathione, 0.01 M oxidized L-Glutathione
Crystal Properties Matthews coefficient Solvent content 3.53 65.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 152.693 α = 90 b = 152.693 β = 90 c = 62.798 γ = 120
Symmetry Space Group P 62 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r 2014-05-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX1 0.954 Australian Synchrotron MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 48.5 100 0.097 18.6 9.6 11093
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.95 100 2 9.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.8 48.5 10489 590 99.89 0.20937 0.20736 0.24554 0.2159 RANDOM 100.759
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.12 1.06 2.12 -6.88
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.477 r_dihedral_angle_3_deg 14.769 r_dihedral_angle_4_deg 14.654 r_long_range_B_refined 13.477 r_long_range_B_other 13.476 r_scangle_other 9.481 r_mcangle_it 7.921 r_mcangle_other 7.918 r_dihedral_angle_1_deg 7.356 r_scbond_it 6.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.477 r_dihedral_angle_3_deg 14.769 r_dihedral_angle_4_deg 14.654 r_long_range_B_refined 13.477 r_long_range_B_other 13.476 r_scangle_other 9.481 r_mcangle_it 7.921 r_mcangle_other 7.918 r_dihedral_angle_1_deg 7.356 r_scbond_it 6.35 r_scbond_other 6.346 r_mcbond_it 5.525 r_mcbond_other 5.522 r_angle_refined_deg 1.376 r_angle_other_deg 0.982 r_chiral_restr 0.071 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1919 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling SHELXDE phasing