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Structures of the candida albicans sey1p GTPase in complex with GDPAlF4-
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 289 160 mM Lithium sulfate monohydrate, 80 mM Tris pH 8.5, 20% w/v Polyethylene glycol 3,350, 40 mM Ammonium acetate, 20 mM Sodium citrate tribasic dihydrate pH 5.6, 6% w/v Polyethylene glycol 4,000, 20 mM spermidine
Crystal Properties Matthews coefficient Solvent content 2.77 55.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.272 α = 90 b = 120.527 β = 90 c = 190.198 γ = 90
Symmetry Space Group I 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2013-12-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 1.0 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 50 99 43.9 10.28 21774
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.85
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.8 48.76 20650 1121 98.94 0.2541 0.25277 0.2667 0.27901 0.2914 RANDOM 78.318
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.51 0.48 0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.143 r_dihedral_angle_3_deg 22.707 r_dihedral_angle_4_deg 17.567 r_long_range_B_refined 14.398 r_long_range_B_other 14.398 r_mcangle_it 9.596 r_mcangle_other 9.595 r_scangle_other 8.78 r_dihedral_angle_1_deg 8.425 r_mcbond_it 5.944
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.143 r_dihedral_angle_3_deg 22.707 r_dihedral_angle_4_deg 17.567 r_long_range_B_refined 14.398 r_long_range_B_other 14.398 r_mcangle_it 9.596 r_mcangle_other 9.595 r_scangle_other 8.78 r_dihedral_angle_1_deg 8.425 r_mcbond_it 5.944 r_mcbond_other 5.944 r_scbond_other 5.24 r_scbond_it 5.236 r_angle_refined_deg 1.763 r_angle_other_deg 0.999 r_chiral_restr 0.107 r_bond_refined_d 0.015 r_bond_other_d 0.006 r_gen_planes_refined 0.006 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5303 Nucleic Acid Atoms Solvent Atoms 115 Heterogen Atoms 34
Software Software Software Name Purpose REFMAC refinement HKL-2000 data processing PHENIX model building