☰ Navigation Tabs
Fragment-Based Drug Discovery Targeting Inhibitor of Apoptosis Proteins: Compound 20
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2OPY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 277 0.1M Hepes-NaOH 7.5, 3.9M NaCl
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.012 α = 90 b = 71.012 β = 90 c = 105.942 γ = 90
Symmetry Space Group P 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN A200 2010-11-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E+ SUPERBRIGHT 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.34 50.2 97 0.035 4.8 2.4 11645
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.34 2.43 96.2 0.125 5.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2OPY 2.36 50.2 10477 620 95.23 0.20112 0.19795 0.1991 0.25852 0.258 RANDOM 41.079
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.855 r_dihedral_angle_4_deg 22.034 r_dihedral_angle_3_deg 19.615 r_long_range_B_refined 7.686 r_dihedral_angle_1_deg 5.403 r_scbond_it 3.458 r_scbond_other 3.454 r_mcbond_it 2.304 r_angle_refined_deg 1.523 r_angle_other_deg 0.192
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.855 r_dihedral_angle_4_deg 22.034 r_dihedral_angle_3_deg 19.615 r_long_range_B_refined 7.686 r_dihedral_angle_1_deg 5.403 r_scbond_it 3.458 r_scbond_other 3.454 r_mcbond_it 2.304 r_angle_refined_deg 1.523 r_angle_other_deg 0.192 r_chiral_restr 0.127 r_bond_refined_d 0.011 r_bond_other_d 0.005 r_gen_planes_refined 0.004 r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_it r_mcangle_other r_scangle_it r_scangle_other r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 874 Nucleic Acid Atoms Solvent Atoms 142 Heterogen Atoms 26
Software Software Software Name Purpose REFMAC refinement d*TREK data reduction d*TREK data scaling PHASER phasing