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Fragment-Based Drug Discovery Targeting Inhibitor of Apoptosis Proteins: Compound 5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 277 0.1M Hepes-NaOH 7.5, 3.9M NaCl
Crystal Properties Matthews coefficient Solvent content 2.32 47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.153 α = 90 b = 71.153 β = 90 c = 105.386 γ = 90
Symmetry Space Group P 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 70 2010-03-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E SUPERBRIGHT 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.67 58.97 97.1 0.103 1.9 2.4 8079
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.67 2.73 99.7 0.448 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.68 58.97 7353 416 96.08 0.20573 0.20248 0.2022 0.26489 0.2629 RANDOM 39.172
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.19 -0.19 0.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.541 r_dihedral_angle_3_deg 19.498 r_dihedral_angle_4_deg 14.441 r_long_range_B_refined 8.938 r_dihedral_angle_1_deg 6.464 r_scbond_it 3.668 r_scbond_other 3.664 r_mcbond_it 2.707 r_angle_refined_deg 1.594 r_angle_other_deg 0.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.541 r_dihedral_angle_3_deg 19.498 r_dihedral_angle_4_deg 14.441 r_long_range_B_refined 8.938 r_dihedral_angle_1_deg 6.464 r_scbond_it 3.668 r_scbond_other 3.664 r_mcbond_it 2.707 r_angle_refined_deg 1.594 r_angle_other_deg 0.27 r_chiral_restr 0.138 r_bond_refined_d 0.012 r_bond_other_d 0.004 r_gen_planes_refined 0.001 r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_it r_mcangle_other r_scangle_it r_scangle_other r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 866 Nucleic Acid Atoms Solvent Atoms 93 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement d*TREK data reduction d*TREK data scaling PHASER phasing