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Human Bromodomain and PHD Finger Containing 1, PWWP domain in complex with XST005904a
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 25% PEG 3350, 0.2M LiSO4, 0.1M HEPES pH7.5
Crystal Properties Matthews coefficient Solvent content 2.06 40.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.453 α = 90 b = 44.453 β = 90 c = 125.877 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-300 2015-01-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.9795 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 50 99.6 0.108 0.111 0.032 8.1 12.5 32041
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.32 99.5 0.976 0.304 0.785 10.4 1554
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.3 41.92 30947 963 98.77 0.1944 0.1937 0.2017 0.2174 0.226 RANDOM 22.002
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.27 -1.27 2.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.258 r_dihedral_angle_4_deg 13.967 r_dihedral_angle_3_deg 13.471 r_dihedral_angle_1_deg 5.527 r_mcangle_it 1.692 r_angle_refined_deg 1.36 r_mcbond_it 1.066 r_mcbond_other 1.066 r_angle_other_deg 0.924 r_chiral_restr 0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.258 r_dihedral_angle_4_deg 13.967 r_dihedral_angle_3_deg 13.471 r_dihedral_angle_1_deg 5.527 r_mcangle_it 1.692 r_angle_refined_deg 1.36 r_mcbond_it 1.066 r_mcbond_other 1.066 r_angle_other_deg 0.924 r_chiral_restr 0.09 r_bond_refined_d 0.009 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1006 Nucleic Acid Atoms Solvent Atoms 180 Heterogen Atoms 34
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction