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Crystal structure of ABBA + UDP-C-Gal (long soak) + DI
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1LZ0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 277 Grown in 1% polyethylene glycol (PEG) 4000, 4.5-5% 2-methyl-2,4-pentanediol (MPD), 100 mM ammonium sulfate, 70 mM sodium chloride, 50 mM N-[-acetamido]-2-iminodiacetic acid (ADA), 30 mM sodium acetate, 5 mM manganese chloride. Grown 5-10 days.
Crystal Properties Matthews coefficient Solvent content 2.33 47.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.53 α = 90 b = 149.55 β = 90 c = 79.18 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 113 IMAGE PLATE RIGAKU RAXIS IV++ 2007-10-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 74.74 96.6 0.033 21 3.97 59599
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.45 82.4 0.293 2.9 2.5 5010
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1LZ0 1.4 74.74 56557 3042 96.54 0.1837 0.1827 0.1818 0.203 0.2018 RANDOM 19.071
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.39 0.15 0.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.272 r_dihedral_angle_4_deg 16.985 r_dihedral_angle_3_deg 11.272 r_dihedral_angle_1_deg 6.528 r_mcangle_it 1.756 r_angle_refined_deg 1.524 r_mcbond_it 1.11 r_mcbond_other 1.106 r_angle_other_deg 0.954 r_chiral_restr 0.091
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.272 r_dihedral_angle_4_deg 16.985 r_dihedral_angle_3_deg 11.272 r_dihedral_angle_1_deg 6.528 r_mcangle_it 1.756 r_angle_refined_deg 1.524 r_mcbond_it 1.11 r_mcbond_other 1.106 r_angle_other_deg 0.954 r_chiral_restr 0.091 r_bond_refined_d 0.009 r_gen_planes_refined 0.007 r_bond_other_d 0.004 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2245 Nucleic Acid Atoms Solvent Atoms 259 Heterogen Atoms 64
Software Software Software Name Purpose REFMAC refinement d*TREK data scaling PDB_EXTRACT data extraction Coot model building PHASER phasing CrystalClear data reduction