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Crystal structure of GTB + UDP-Gal + DI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 277 Grown in 1% polyethylene glycol (PEG) 4000, 4.5-5% 2-methyl-2,4-pentanediol (MPD), 100 mM ammonium sulfate, 70 mM sodium chloride, 50 mM N-[-acetamido]-2-iminodiacetic acid (ADA), 30 mM sodium acetate, 5 mM manganese chloride. Grown 5-10 days.
Crystal Properties Matthews coefficient Solvent content 2.34 47.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.57 α = 90 b = 149.31 β = 90 c = 79.23 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 113 IMAGE PLATE RIGAKU RAXIS IV++ 2007-10-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 74.74 96.1 0.032 22.4 4.52 59299
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.45 81.7 0.311 3.2 2.82 4972
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.4 74.74 56289 3009 96.07 0.1764 0.1752 0.1739 0.1992 0.1972 RANDOM 19.408
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.6 0.21 0.4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.766 r_dihedral_angle_4_deg 17.304 r_dihedral_angle_3_deg 11.034 r_dihedral_angle_1_deg 6.651 r_mcangle_it 1.83 r_angle_refined_deg 1.542 r_mcbond_it 1.144 r_mcbond_other 1.138 r_angle_other_deg 0.952 r_chiral_restr 0.086
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.766 r_dihedral_angle_4_deg 17.304 r_dihedral_angle_3_deg 11.034 r_dihedral_angle_1_deg 6.651 r_mcangle_it 1.83 r_angle_refined_deg 1.542 r_mcbond_it 1.144 r_mcbond_other 1.138 r_angle_other_deg 0.952 r_chiral_restr 0.086 r_bond_refined_d 0.009 r_gen_planes_refined 0.007 r_bond_other_d 0.003 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2259 Nucleic Acid Atoms Solvent Atoms 256 Heterogen Atoms 64
Software Software Software Name Purpose REFMAC refinement d*TREK data scaling MOLREP phasing PDB_EXTRACT data extraction CrystalClear data reduction