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HLA-A02 carrying RQFGPDWIVA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3UTQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 0.2M sodium sulphate, 0.1M BIS TRIS propane, pH 6.5, 20% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.56 51.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.29 α = 90 b = 80.13 β = 115.81 c = 56.95 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2012-03-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.9763 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.64 42.83 99.6 0.064 0.039 0.997 11.7 3.6 55141
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.64 1.69 99.9 0.867 0.538 0.658 1.8 3.6 4074
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3UTQ 1.64 42.83 52281 2796 99.47 0.1813 0.1795 0.2143 0.2231 RANDOM 26.86
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.29 -0.18 -1.06 1.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.048 r_dihedral_angle_4_deg 21.294 r_dihedral_angle_3_deg 14.351 r_dihedral_angle_1_deg 6.316 r_mcangle_it 2.427 r_angle_refined_deg 1.964 r_mcbond_it 1.592 r_mcbond_other 1.592 r_angle_other_deg 0.912 r_chiral_restr 0.128
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.048 r_dihedral_angle_4_deg 21.294 r_dihedral_angle_3_deg 14.351 r_dihedral_angle_1_deg 6.316 r_mcangle_it 2.427 r_angle_refined_deg 1.964 r_mcbond_it 1.592 r_mcbond_other 1.592 r_angle_other_deg 0.912 r_chiral_restr 0.128 r_bond_refined_d 0.02 r_gen_planes_refined 0.011 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3184 Nucleic Acid Atoms Solvent Atoms 125 Heterogen Atoms 61
Software Software Software Name Purpose Aimless data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction XDS data reduction