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HLA-A02 carrying YLGGPDFPTI
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3UTQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 0.2M sodium nitrate, 0.1M BIS TRIS propane pH6.5, 20% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.55 51.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.03 α = 90 b = 79.17 β = 115.54 c = 58.29 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2012-03-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.9763 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.37 43.808 96.9 0.047 0.067 0.035 11.6 3.6 91447 91447
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.37 1.41 95.1 0.894 0.894 0.602 0.8 3.4 6605
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3UTQ 1.37 43.808 86810 4579 96.69 0.1641 0.1629 0.1709 0.1876 0.1969 RANDOM 19.289
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.63 -0.43 -0.2 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.648 r_dihedral_angle_4_deg 18.995 r_dihedral_angle_3_deg 15.283 r_dihedral_angle_1_deg 6.799 r_mcangle_it 2.268 r_angle_refined_deg 2.237 r_mcbond_it 1.412 r_mcbond_other 1.405 r_angle_other_deg 1.052 r_chiral_restr 0.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.648 r_dihedral_angle_4_deg 18.995 r_dihedral_angle_3_deg 15.283 r_dihedral_angle_1_deg 6.799 r_mcangle_it 2.268 r_angle_refined_deg 2.237 r_mcbond_it 1.412 r_mcbond_other 1.405 r_angle_other_deg 1.052 r_chiral_restr 0.19 r_bond_refined_d 0.021 r_gen_planes_refined 0.012 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3168 Nucleic Acid Atoms Solvent Atoms 381 Heterogen Atoms 61
Software Software Software Name Purpose SCALA data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction XDS data reduction