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HLA-A02 carrying RQWGPDPAAV
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3UTQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 0.1M TRIS, pH 8, 20% PEG 8000, 15% glycerol
Crystal Properties Matthews coefficient Solvent content 2.56 51.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.36 α = 90 b = 79.78 β = 115.7 c = 56.97 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2011-01-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.9763 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.46 42.841 99.4 0.049 0.069 0.034 14.7 4 77814 77814
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.46 1.5 100 0.545 0.545 0.362 1.4 4 5762
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3UTQ 1.463 42.84 73875 3913 99.42 0.1536 0.1522 0.161 0.1808 0.1878 RANDOM 18.305
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.12 -0.17 -0.5 0.53
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.538 r_dihedral_angle_4_deg 20.003 r_dihedral_angle_3_deg 13.966 r_dihedral_angle_1_deg 6.878 r_angle_refined_deg 2.086 r_mcangle_it 1.738 r_mcbond_it 1.117 r_mcbond_other 1.069 r_angle_other_deg 0.915 r_chiral_restr 0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.538 r_dihedral_angle_4_deg 20.003 r_dihedral_angle_3_deg 13.966 r_dihedral_angle_1_deg 6.878 r_angle_refined_deg 2.086 r_mcangle_it 1.738 r_mcbond_it 1.117 r_mcbond_other 1.069 r_angle_other_deg 0.915 r_chiral_restr 0.12 r_bond_refined_d 0.019 r_gen_planes_refined 0.011 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3177 Nucleic Acid Atoms Solvent Atoms 457 Heterogen Atoms 118
Software Software Software Name Purpose SCALA data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction XDS data reduction