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1E6 TCR in complex with HLA-A02 carrying RQFGPDWIVA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3UTP 3UTP and 3UTQ experimental model PDB 3UTQ 3UTP and 3UTQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 0.1M HEPES pH7, 15% PEG 4000, 0.2M sodium acetate
Crystal Properties Matthews coefficient Solvent content 2.75 55.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.92 α = 96.9 b = 100.37 β = 98.02 c = 122.73 γ = 96.07
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2012-03-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.97630 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.97 120.384 97.4 0.048 0.06 0.04 8.3 2 139923 139923
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.97 2.03 96 0.324 0.324 0.38 2.2 2 10178
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3UTP and 3UTQ 1.974 120.38 132894 7029 97.42 0.1904 0.1885 0.1955 0.2273 0.2332 RANDOM 52.279
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.97 -0.18 -0.04 0.08 0.04 -1.87
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.774 r_dihedral_angle_4_deg 20.557 r_dihedral_angle_3_deg 18.974 r_dihedral_angle_1_deg 7.645 r_mcangle_it 2.825 r_angle_refined_deg 2.04 r_mcbond_it 1.871 r_mcbond_other 1.871 r_angle_other_deg 1.334 r_chiral_restr 0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.774 r_dihedral_angle_4_deg 20.557 r_dihedral_angle_3_deg 18.974 r_dihedral_angle_1_deg 7.645 r_mcangle_it 2.825 r_angle_refined_deg 2.04 r_mcbond_it 1.871 r_mcbond_other 1.871 r_angle_other_deg 1.334 r_chiral_restr 0.16 r_bond_refined_d 0.019 r_gen_planes_refined 0.01 r_bond_other_d 0.006 r_gen_planes_other 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13473 Nucleic Acid Atoms Solvent Atoms 569 Heterogen Atoms 193
Software Software Software Name Purpose SCALA data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction XDS data reduction