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Canavalia maritima lectin complexed with synthetic selenoamino acid
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 Hepes-Na, ammonium sulfate, PEG 400, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.83 56.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 190.64 α = 90 b = 190.64 β = 90 c = 190.64 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2012-02-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LNLS BEAMLINE W01B-MX2 1.42 LNLS W01B-MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.651 110.066 99.9 0.117 0.126 0.048 9.8 6.6 16760 16760
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.65 2.79 99.9 0.336 0.336 0.153 2 5.6 2431
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.651 38.91 15900 858 99.82 0.2075 0.2039 0.2294 0.2779 0.2908 RANDOM 42.582
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -7.75 18.28 -4.62 21.51 -7.69 -13.76
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.2 r_dihedral_angle_4_deg 20.434 r_dihedral_angle_3_deg 17.887 r_dihedral_angle_1_deg 7.79 r_sphericity_free 7.031 r_sphericity_bonded 2.462 r_rigid_bond_restr 2.453 r_angle_other_deg 2.294 r_angle_refined_deg 1.827 r_mcangle_it 1.564
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.2 r_dihedral_angle_4_deg 20.434 r_dihedral_angle_3_deg 17.887 r_dihedral_angle_1_deg 7.79 r_sphericity_free 7.031 r_sphericity_bonded 2.462 r_rigid_bond_restr 2.453 r_angle_other_deg 2.294 r_angle_refined_deg 1.827 r_mcangle_it 1.564 r_mcbond_it 1.175 r_mcbond_other 1.175 r_chiral_restr 0.093 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_gen_planes_other 0.004 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3589 Nucleic Acid Atoms Solvent Atoms 65 Heterogen Atoms 68
Software Software Software Name Purpose REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction MOLREP phasing