☰ Navigation Tabs
The complex structure of C3cer exoenzyme and GDP bound RhoA (NADH-bound state)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1A2B 1A2B and 3BW8 experimental model PDB 3BW8 1A2B and 3BW8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 277 100 mM MES (pH 6.4), 20% PEG1500
Crystal Properties Matthews coefficient Solvent content 2.29 46.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.479 α = 90 b = 50.479 β = 90 c = 136.671 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2015-05-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 1.00 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 50 99.6 17.4 4.7 13477
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.54 100 1.81 4.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1A2B and 3BW8 2.5 45.56 12780 665 99.54 0.21103 0.20926 0.2091 0.24596 0.241 RANDOM 76.41
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.53 -0.27 -0.53 1.73
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.317 r_dihedral_angle_4_deg 26.568 r_dihedral_angle_3_deg 22.405 r_long_range_B_refined 9.404 r_long_range_B_other 9.404 r_scangle_other 5.346 r_mcangle_it 4.839 r_mcangle_other 4.838 r_scbond_it 3.419 r_scbond_other 3.412
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.317 r_dihedral_angle_4_deg 26.568 r_dihedral_angle_3_deg 22.405 r_long_range_B_refined 9.404 r_long_range_B_other 9.404 r_scangle_other 5.346 r_mcangle_it 4.839 r_mcangle_other 4.838 r_scbond_it 3.419 r_scbond_other 3.412 r_mcbond_other 3.126 r_mcbond_it 3.125 r_dihedral_angle_1_deg 1.813 r_angle_refined_deg 1.737 r_angle_other_deg 1.342 r_chiral_restr 0.128 r_bond_refined_d 0.02 r_gen_planes_refined 0.008 r_bond_other_d 0.005 r_gen_planes_other 0.004 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3074 Nucleic Acid Atoms Solvent Atoms 55 Heterogen Atoms 81
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHENIX phasing