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Crystal structure of modified HexB (modB)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.4 288 0.2 M Sodium Formate, 20% PEG 3350
Crystal Properties Matthews coefficient Solvent content 3 59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 126.47 α = 90 b = 126.47 β = 90 c = 88.31 γ = 90
Symmetry Space Group P 42 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 2013-05-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NE3A 1.000 Photon Factory AR-NE3A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 40 100 0.143 12.3 12 28619 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.5 99.9 0.698 2.6 9.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.4 40 27149 1428 99.93 0.19009 0.18749 0.1953 0.24014 0.2424 RANDOM 36.347
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.04 -1.04 2.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.786 r_dihedral_angle_4_deg 22.756 r_dihedral_angle_3_deg 17.873 r_long_range_B_other 8.692 r_long_range_B_refined 8.684 r_dihedral_angle_1_deg 8.166 r_scangle_other 7.179 r_mcangle_it 5.451 r_mcangle_other 5.45 r_scbond_it 4.871
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.786 r_dihedral_angle_4_deg 22.756 r_dihedral_angle_3_deg 17.873 r_long_range_B_other 8.692 r_long_range_B_refined 8.684 r_dihedral_angle_1_deg 8.166 r_scangle_other 7.179 r_mcangle_it 5.451 r_mcangle_other 5.45 r_scbond_it 4.871 r_scbond_other 4.871 r_mcbond_it 3.8 r_mcbond_other 3.799 r_angle_refined_deg 1.61 r_angle_other_deg 0.771 r_chiral_restr 0.105 r_bond_refined_d 0.013 r_gen_planes_refined 0.013 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3952 Nucleic Acid Atoms Solvent Atoms 150 Heterogen Atoms 65
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling MOLREP phasing Coot model building