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CDK8/CYCC IN COMPLEX WITH 8-{3-Chloro-5-[4-(1-methyl-1H-pyrazol-4-yl)-phenyl]-pyridin- 4-yl}-2,8-diaza-spiro[4.5]decan-1-one
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6.9 293 20% PEG3350, 0.2 M sodium formate, pH 6.9,
Crystal Properties Matthews coefficient Solvent content 3.08 60.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.787 α = 90 b = 71.489 β = 90 c = 172.532 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2014-05-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 1.00000 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.64 86.27 97.8 0.081 14.1 4.2 25877
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.64 2.89 98.8 0.523 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT NONE 2.64 86.27 24989 888 97.76 0.2277 0.2261 0.2305 0.2734 0.285 RANDOM 46.604
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.84 -3.14 3.97
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.668 r_dihedral_angle_4_deg 13.424 r_dihedral_angle_3_deg 11.964 r_dihedral_angle_1_deg 5.398 r_scangle_it 2.948 r_scbond_it 1.938 r_mcangle_it 1.494 r_mcbond_it 1.3 r_angle_refined_deg 1.082 r_angle_other_deg 0.884
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.668 r_dihedral_angle_4_deg 13.424 r_dihedral_angle_3_deg 11.964 r_dihedral_angle_1_deg 5.398 r_scangle_it 2.948 r_scbond_it 1.938 r_mcangle_it 1.494 r_mcbond_it 1.3 r_angle_refined_deg 1.082 r_angle_other_deg 0.884 r_mcbond_other 0.161 r_nbtor_refined 0.159 r_nbd_refined 0.157 r_symmetry_vdw_other 0.137 r_nbd_other 0.123 r_symmetry_vdw_refined 0.106 r_xyhbond_nbd_refined 0.098 r_nbtor_other 0.074 r_symmetry_hbond_refined 0.074 r_chiral_restr 0.061 r_bond_refined_d 0.009 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5050 Nucleic Acid Atoms Solvent Atoms 57 Heterogen Atoms 36
Software Software Software Name Purpose REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction REFMAC phasing