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Crystal structure of the HLTF HIRAN domain with a ssDNA fragment
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 291 0.1 M Sodium acetate trihydrate pH 5.0, 40% 2-Methyl-2,4-pentanediol
Crystal Properties Matthews coefficient Solvent content 2.25 45.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.469 α = 90 b = 50.117 β = 90 c = 102.763 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2010-11-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97921 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 51.38 99.908 3.9 9.4 28334
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.7 51.38 26849 1414 99.97 0.16719 0.16482 0.1751 0.21353 0.2156 RANDOM 22.656
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.35 -1.48 0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.637 r_dihedral_angle_4_deg 26.306 r_dihedral_angle_3_deg 13.601 r_long_range_B_refined 7.737 r_long_range_B_other 7.615 r_dihedral_angle_1_deg 6.714 r_scangle_other 5.585 r_scbond_it 3.691 r_scbond_other 3.651 r_mcangle_it 2.583
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.637 r_dihedral_angle_4_deg 26.306 r_dihedral_angle_3_deg 13.601 r_long_range_B_refined 7.737 r_long_range_B_other 7.615 r_dihedral_angle_1_deg 6.714 r_scangle_other 5.585 r_scbond_it 3.691 r_scbond_other 3.651 r_mcangle_it 2.583 r_mcangle_other 2.583 r_angle_refined_deg 1.933 r_mcbond_it 1.843 r_mcbond_other 1.716 r_angle_other_deg 0.906 r_chiral_restr 0.126 r_bond_refined_d 0.019 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1898 Nucleic Acid Atoms 96 Solvent Atoms 148 Heterogen Atoms 28
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing