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Crystal structure of Macrophage Migration Inhibitory Factor in complex with BTZO-14
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2OOH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9 293 2.4M ammonium sulfate, 0.1M bicine pH 9.0
, 2.4 mM BTZO-14
Crystal Properties Matthews coefficient Solvent content 3.65 66.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 95.194 α = 90 b = 95.194 β = 90 c = 103.296 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2007-08-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.3 1.0000 ALS 5.0.3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.37 50 99.8 0.044 37.67 6.3 113585 17.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.37 1.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2OOH 1.37 43.77 108040 5406 95 0.184 0.183 0.1811 0.198 0.1956 RANDOM 20.4
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 0.24 0.02 -0.05
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 21.1 c_scangle_it 4.53 c_scbond_it 3.14 c_mcangle_it 1.73 c_angle_deg 1.3 c_mcbond_it 1.28 c_improper_angle_d 0.88 c_bond_d 0.011 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 21.1 c_scangle_it 4.53 c_scbond_it 3.14 c_mcangle_it 1.73 c_angle_deg 1.3 c_mcbond_it 1.28 c_improper_angle_d 0.88 c_bond_d 0.011 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2651 Nucleic Acid Atoms Solvent Atoms 442 Heterogen Atoms 117
Software Software Software Name Purpose CNX refinement HKL-2000 data reduction CNX phasing SCALEPACK data scaling