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Crystal structure of an Fab against human influenza A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 294 PEG 3350, NaCl, Bis-Tris
Crystal Properties Matthews coefficient Solvent content 1.99 38.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.592 α = 90 b = 90.94 β = 92.21 c = 81.442 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD OXFORD RUBY CCD 2014-07-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SEALED TUBE OXFORD DIFFRACTION ENHANCE ULTRA 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 81.38 98.5 0.07 16.1 3.5 27507
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.44 97.7 0.445 2.2 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.4 81.38 27507 1477 98.47 0.28785 0.28508 0.2818 0.33796 0.3326 RANDOM 39.122
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.64 -0.37 -2.83 -2.78
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.74 r_dihedral_angle_4_deg 20.375 r_dihedral_angle_3_deg 17.514 r_dihedral_angle_1_deg 7.914 r_angle_refined_deg 1.561 r_long_range_B_refined 1.178 r_long_range_B_other 1.178 r_angle_other_deg 1.022 r_mcangle_it 0.26 r_mcangle_other 0.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.74 r_dihedral_angle_4_deg 20.375 r_dihedral_angle_3_deg 17.514 r_dihedral_angle_1_deg 7.914 r_angle_refined_deg 1.561 r_long_range_B_refined 1.178 r_long_range_B_other 1.178 r_angle_other_deg 1.022 r_mcangle_it 0.26 r_mcangle_other 0.26 r_mcbond_it 0.138 r_scangle_other 0.138 r_mcbond_other 0.137 r_chiral_restr 0.082 r_scbond_it 0.065 r_scbond_other 0.064 r_bond_refined_d 0.011 r_gen_planes_refined 0.008 r_bond_other_d 0.004 r_gen_planes_other 0.004 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6738 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing