☰ Navigation Tabs
Crystal structure of I86D mutant of phycocyanobilin:ferredoxin oxidoreductase in complex with biliverdin (data 2)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4QCD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 sodium citrate, sodium chloride, Tris
Crystal Properties Matthews coefficient Solvent content 2.55 53.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.833 α = 90 b = 95.691 β = 90 c = 42.398 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU JUPITER 210 2010-04-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL38B1 0.8000 SPring-8 BL38B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 56.94 99.3 15.1 6 114063
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.1 1.15 98.6 0.363 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 4QCD 1.11 10 108124 108124 99.5 0.1268 0.1347 0.1525 0.1387 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 39 2304.9
RMS Deviations Key Refinement Restraint Deviation s_approx_iso_adps 0.1675 s_zero_chiral_vol 0.0977 s_non_zero_chiral_vol 0.0966 s_similar_adp_cmpnt 0.0544 s_anti_bump_dis_restr 0.0376 s_angle_d 0.0336 s_bond_d 0.0169
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2056 Nucleic Acid Atoms Solvent Atoms 358 Heterogen Atoms 43
Software Software Software Name Purpose SHELXL-97 refinement PHENIX phasing HKL-2000 data reduction HKL-2000 data scaling SHELX phasing