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Crystal structure of LGG-2 fused with an EEEWEEL peptide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 sodium chloride, magnesium chloride, HEPES
Crystal Properties Matthews coefficient Solvent content 2.36 47.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.532 α = 90 b = 55.193 β = 90 c = 72.592 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD RAYONIX MX-225 2015-09-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL32XU 1.0 SPring-8 BL32XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 43.94 98.3 0.104 29.3 18.4 7374
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.24 85.9 0.859 14.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.3 43.94 6372 341 99.47 0.23826 0.23564 0.2382 0.28827 0.2953 RANDOM 59.276
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.01 -2.6 6.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.392 r_dihedral_angle_3_deg 15.78 r_dihedral_angle_4_deg 13.892 r_dihedral_angle_1_deg 5.464 r_long_range_B_refined 4.833 r_long_range_B_other 4.764 r_scangle_other 1.759 r_mcangle_it 1.687 r_mcangle_other 1.686 r_angle_refined_deg 1.245
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.392 r_dihedral_angle_3_deg 15.78 r_dihedral_angle_4_deg 13.892 r_dihedral_angle_1_deg 5.464 r_long_range_B_refined 4.833 r_long_range_B_other 4.764 r_scangle_other 1.759 r_mcangle_it 1.687 r_mcangle_other 1.686 r_angle_refined_deg 1.245 r_scbond_it 1.024 r_scbond_other 1.024 r_mcbond_other 0.973 r_mcbond_it 0.972 r_angle_other_deg 0.919 r_chiral_restr 0.07 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1038 Nucleic Acid Atoms Solvent Atoms 35 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling Coot model building