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Crystal structure of (5-residue deleted)MBP-Tom20 fusion protein tethered with ALDH presequence via a disulfide bond
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ANF 1ANF, 2V1T experimental model PDB 2V1T 1ANF, 2V1T
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 20% PEG 3350, 0.2M Potassium nitrate
Crystal Properties Matthews coefficient Solvent content 2.76 55.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 160.476 α = 90 b = 71.396 β = 104.91 c = 47.538 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX225HE 2012-04-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL44XU 0.9 SPring-8 BL44XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.82 50 99.8 14 3.64 46512
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1ANF, 2V1T 1.82 39.55 44161 2351 99.81 0.19391 0.19209 0.2015 0.22705 0.2323 RANDOM 36.707
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 -0.08 0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.689 r_dihedral_angle_4_deg 18.315 r_dihedral_angle_3_deg 17.471 r_long_range_B_refined 7.475 r_long_range_B_other 7.467 r_dihedral_angle_1_deg 6.736 r_scangle_other 6.027 r_mcangle_it 4.264 r_mcangle_other 4.264 r_scbond_it 4.065
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.689 r_dihedral_angle_4_deg 18.315 r_dihedral_angle_3_deg 17.471 r_long_range_B_refined 7.475 r_long_range_B_other 7.467 r_dihedral_angle_1_deg 6.736 r_scangle_other 6.027 r_mcangle_it 4.264 r_mcangle_other 4.264 r_scbond_it 4.065 r_scbond_other 4.064 r_mcbond_other 3.133 r_mcbond_it 3.132 r_angle_refined_deg 1.895 r_angle_other_deg 0.955 r_chiral_restr 0.121 r_bond_refined_d 0.019 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3326 Nucleic Acid Atoms Solvent Atoms 172 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling PHASER phasing