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Crystal structure of MBP-Tom20 fusion protein tethered with ALDH presequence via a disulfide bond
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ANF 1ANF, 2V1T experimental model PDB 2V1T 1ANF, 2V1T
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 24% PEG 8000, 20% Glycerol, 0.04M Potassium thiocyanate
Crystal Properties Matthews coefficient Solvent content 2.56 51.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.013 α = 90 b = 69.013 β = 90 c = 212.604 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2012-04-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-17A 1.0 Photon Factory BL-17A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 50 98.4 22.1 13.8 56782
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1ANF, 2V1T 1.7 42.11 53911 2880 98.47 0.16347 0.16168 0.19555 0.2375 RANDOM 26.954
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.01 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.876 r_dihedral_angle_4_deg 19.065 r_dihedral_angle_3_deg 13.557 r_long_range_B_refined 8.942 r_long_range_B_other 8.754 r_dihedral_angle_1_deg 6.542 r_scangle_other 6.218 r_scbond_it 4.172 r_scbond_other 4.172 r_mcangle_it 2.653
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.876 r_dihedral_angle_4_deg 19.065 r_dihedral_angle_3_deg 13.557 r_long_range_B_refined 8.942 r_long_range_B_other 8.754 r_dihedral_angle_1_deg 6.542 r_scangle_other 6.218 r_scbond_it 4.172 r_scbond_other 4.172 r_mcangle_it 2.653 r_mcangle_other 2.652 r_mcbond_it 2.013 r_mcbond_other 2.012 r_angle_refined_deg 2.01 r_angle_other_deg 1.105 r_chiral_restr 0.127 r_bond_refined_d 0.021 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3465 Nucleic Acid Atoms Solvent Atoms 403 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling PHASER phasing