☰ Navigation Tabs
Crystal Structure of the Human ROR gamma Ligand Binding Domain With 3g
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3BOW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 0.1M Tris-HCl , pH 7.5, 0.5M Na/K tartrate, 2.5M, MPD
Crystal Properties Matthews coefficient Solvent content 3.13 60.73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 99.24 α = 90 b = 99.24 β = 90 c = 127.84 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 2009-02-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-17A 1.0 Photon Factory BL-17A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 85.94 100 0.057 29.7 10.6 22021 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.74 100 0.309 6.6 7.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 3BOW 2.6 85.94 20852 1128 99.98 0.18578 0.18353 0.1852 0.22673 0.2274 RANDOM 56.251
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.11 -0.05 -0.11 0.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.808 r_dihedral_angle_4_deg 23.633 r_dihedral_angle_3_deg 16.69 r_long_range_B_refined 12.44 r_scbond_it 7.899 r_mcangle_it 7.792 r_dihedral_angle_1_deg 6.714 r_mcbond_it 5.493 r_angle_refined_deg 2.052 r_chiral_restr 0.157
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.808 r_dihedral_angle_4_deg 23.633 r_dihedral_angle_3_deg 16.69 r_long_range_B_refined 12.44 r_scbond_it 7.899 r_mcangle_it 7.792 r_dihedral_angle_1_deg 6.714 r_mcbond_it 5.493 r_angle_refined_deg 2.052 r_chiral_restr 0.157 r_bond_refined_d 0.012 r_gen_planes_refined 0.012 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3512 Nucleic Acid Atoms Solvent Atoms 85 Heterogen Atoms 60
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing