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Sequence IANKEDKAD inserted between GCN4 adaptors - Structure A9b black
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2WPQ PDB ENTRY 2WPQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 2.4 M SODIUM MALONATE PH 5.0
Crystal Properties Matthews coefficient Solvent content 2 37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 26.2 α = 90 b = 37.52 β = 92.56 c = 95 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2011-04-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 34.9 95.9 0.03 17.6 3.72 39198 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.35 1.43 92.1 0.67 2.1 3.47
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2WPQ 1.35 34.89 37232 1963 95.87 0.16513 0.16341 0.1767 0.19908 0.2098 RANDOM 23.924
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.1 -1.36 -0.18 0.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.598 r_sphericity_free 30.353 r_dihedral_angle_4_deg 15.395 r_dihedral_angle_3_deg 13.381 r_sphericity_bonded 9.526 r_dihedral_angle_1_deg 3.153 r_scbond_it 1.979 r_mcangle_it 1.709 r_mcbond_other 1.327 r_mcbond_it 1.326
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.598 r_sphericity_free 30.353 r_dihedral_angle_4_deg 15.395 r_dihedral_angle_3_deg 13.381 r_sphericity_bonded 9.526 r_dihedral_angle_1_deg 3.153 r_scbond_it 1.979 r_mcangle_it 1.709 r_mcbond_other 1.327 r_mcbond_it 1.326 r_rigid_bond_restr 0.996 r_angle_refined_deg 0.869 r_angle_other_deg 0.66 r_chiral_restr 0.045 r_bond_refined_d 0.005 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1651 Nucleic Acid Atoms Solvent Atoms 216 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling MOLREP phasing