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Crystal structure of CDK2 in complex with 7-hydroxy-4-(morpholinomethyl)chromen-2-one processed with the CrystalDirect automated mounting and cryo-cooling technology
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 0.02 M HEPES, PH=7.0, 5% GLYCEROL, 12% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.05 40.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.711 α = 90 b = 71.828 β = 90 c = 72.351 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 29.85 99.9 0.07 6.5 22707 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 1.9 30 21503 1158 99.89 0.19862 0.19665 0.2059 0.23569 0.2443 RANDOM 32.998
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.49 1.78 -1.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.811 r_dihedral_angle_4_deg 16.748 r_dihedral_angle_3_deg 15.864 r_dihedral_angle_1_deg 6.443 r_mcangle_it 4.473 r_scbond_it 4.453 r_mcbond_it 3.181 r_mcbond_other 3.179 r_angle_refined_deg 2.066 r_angle_other_deg 1.043
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.811 r_dihedral_angle_4_deg 16.748 r_dihedral_angle_3_deg 15.864 r_dihedral_angle_1_deg 6.443 r_mcangle_it 4.473 r_scbond_it 4.453 r_mcbond_it 3.181 r_mcbond_other 3.179 r_angle_refined_deg 2.066 r_angle_other_deg 1.043 r_chiral_restr 0.117 r_bond_refined_d 0.019 r_gen_planes_refined 0.011 r_bond_other_d 0.006 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2155 Nucleic Acid Atoms Solvent Atoms 82 Heterogen Atoms 19
Software Software Software Name Purpose REFMAC refinement