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The complex of Tse2 and Tsi2 from Pseudomonas aeruginosa
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3VPV PDB ENTRY 3VPV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 20 MM TRIS PH 8.5, 0.2 M NACL, 22% PEG 4K
Crystal Properties Matthews coefficient Solvent content 2.14 43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.725 α = 90 b = 103.138 β = 90 c = 114.642 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 113 PIXEL DECTRIS PILATUS 6M K-B FOCUSING MIRRORS 2013-02-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL12-2 SSRL BL12-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 35.84 97.6 0.09 13.4 4 17725 2 35.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.53 99.1 0.73 2.3 4.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3VPV 2.4 35.83 16778 896 96.91 0.2 0.197 0.2047 0.253 RANDOM 41.87
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -6.81 -2.66 9.46
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.793 r_dihedral_angle_4_deg 22.422 r_dihedral_angle_3_deg 14.21 r_dihedral_angle_1_deg 6.875 r_angle_refined_deg 1.543 r_angle_other_deg 1.02 r_chiral_restr 0.085 r_bond_refined_d 0.014 r_gen_planes_refined 0.009 r_bond_other_d 0.005
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.793 r_dihedral_angle_4_deg 22.422 r_dihedral_angle_3_deg 14.21 r_dihedral_angle_1_deg 6.875 r_angle_refined_deg 1.543 r_angle_other_deg 1.02 r_chiral_restr 0.085 r_bond_refined_d 0.014 r_gen_planes_refined 0.009 r_bond_other_d 0.005 r_gen_planes_other 0.004 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3437 Nucleic Acid Atoms Solvent Atoms 74 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALEPACK data scaling PHENIX phasing