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Structure of Infrared Fluorescent Protein IFP1.4 AT 1.11 Angstrom resolution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4CQH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5 26% PEG 400, 0.1 M SODIUM ACETATE PH 5.0
Crystal Properties Matthews coefficient Solvent content 2.26 45.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 95.361 α = 90 b = 53.028 β = 90.9 c = 66.219 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2013-11-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.11 38.4 98.5 0.03 17.6 4.3 121711 2 14.239
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.11 1.13 92.1 0.62 2 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4CQH 1.11 38.43 121711 6417 98.41 0.14693 0.14581 0.1558 0.16806 0.1788 RANDOM 17.135
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.18 -0.04 0.13 0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.353 r_sphericity_free 23.68 r_dihedral_angle_4_deg 14.139 r_dihedral_angle_3_deg 11.859 r_sphericity_bonded 10.367 r_dihedral_angle_1_deg 6.37 r_rigid_bond_restr 3.275 r_mcangle_it 2.89 r_scbond_it 2.656 r_mcbond_it 2.289
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.353 r_sphericity_free 23.68 r_dihedral_angle_4_deg 14.139 r_dihedral_angle_3_deg 11.859 r_sphericity_bonded 10.367 r_dihedral_angle_1_deg 6.37 r_rigid_bond_restr 3.275 r_mcangle_it 2.89 r_scbond_it 2.656 r_mcbond_it 2.289 r_mcbond_other 2.254 r_angle_refined_deg 1.944 r_angle_other_deg 0.95 r_chiral_restr 0.143 r_bond_refined_d 0.014 r_gen_planes_refined 0.011 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2298 Nucleic Acid Atoms Solvent Atoms 262 Heterogen Atoms 43
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing