☰ Navigation Tabs
A complex of the synthetic siderophore analogue Fe(III)-8-LICAM with the CeuE periplasmic protein from Campylobacter jejuni
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5A5V PDB ENTRY 5A5V
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 0.2M SODIUM FORMATE, 0.1M BTP BUFFER, PH 8.5, 20% PEG 3350.
Crystal Properties Matthews coefficient Solvent content 2.63 53.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.98 α = 90 b = 55.98 β = 90 c = 140.08 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2015-07-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.32 55.98 96.6 0.08 11 5.9 77761 1.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.32 1.35 76 0.85 1.3 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 5A5V 1.32 55.98 73860 3815 96.64 0.14195 0.14001 0.1519 0.18056 0.188 RANDOM 13.926
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.27 0.3 -0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.308 r_sphericity_free 23.585 r_dihedral_angle_3_deg 11.812 r_dihedral_angle_4_deg 10.188 r_sphericity_bonded 9.78 r_dihedral_angle_1_deg 5.845 r_rigid_bond_restr 4.772 r_scbond_it 3.36 r_angle_refined_deg 1.96 r_mcangle_it 1.867
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.308 r_sphericity_free 23.585 r_dihedral_angle_3_deg 11.812 r_dihedral_angle_4_deg 10.188 r_sphericity_bonded 9.78 r_dihedral_angle_1_deg 5.845 r_rigid_bond_restr 4.772 r_scbond_it 3.36 r_angle_refined_deg 1.96 r_mcangle_it 1.867 r_mcbond_it 1.584 r_mcbond_other 1.584 r_angle_other_deg 0.988 r_chiral_restr 0.133 r_bond_refined_d 0.02 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2239 Nucleic Acid Atoms Solvent Atoms 397 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement xia2 data reduction PHASER phasing