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Crystal Structure of the Human Cdk12-Cyclink Complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 10% PEG8000, 0.2M MAGNESIUM CHLORIDE, 0.1M HEPES PH7.0
Crystal Properties Matthews coefficient Solvent content 2.41 48.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.78 α = 90 b = 148.69 β = 93.81 c = 91.58 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 41.3 98.7 0.07 12.5 3 36020
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT NONE 2.7 91.38 34240 1756 98.64 0.22339 0.2214 0.26187 0.2375 RANDOM 60.778
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.27 -1.55 4.76 -4.78
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.455 r_dihedral_angle_4_deg 14.405 r_dihedral_angle_3_deg 13.842 r_dihedral_angle_1_deg 5.559 r_mcangle_it 3.634 r_mcbond_it 2.144 r_mcbond_other 2.143 r_scbond_it 1.956 r_angle_refined_deg 1.137 r_angle_other_deg 0.974
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.455 r_dihedral_angle_4_deg 14.405 r_dihedral_angle_3_deg 13.842 r_dihedral_angle_1_deg 5.559 r_mcangle_it 3.634 r_mcbond_it 2.144 r_mcbond_other 2.143 r_scbond_it 1.956 r_angle_refined_deg 1.137 r_angle_other_deg 0.974 r_chiral_restr 0.063 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8993 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 80
Software Software Software Name Purpose REFMAC refinement xia2 data reduction Aimless data scaling