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Sheep aldehyde dehydrogenase 1A1 with duocarmycin analog inhibitor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4X4L PDB ENTRY 4X4L
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 277 100 MM BIS-TRIS, PH 6.0, 4.5-7% PEG5000, 150=225MM MGCL2, 4DEGREE
Crystal Properties Matthews coefficient Solvent content 2.62 26.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 188.336 α = 90 b = 80.953 β = 118.13 c = 172.331 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-05-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 49.4 98.4 0.18 8.9 6.7 134836
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.16 84.9 0.92 1.7 5.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4X4L 2.08 49.38 128092 6743 98.36 0.23052 0.22872 0.2344 0.26494 0.2709 RANDOM 27.807
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.27 0.05 -0.36 -0.62
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.286 r_dihedral_angle_4_deg 20.393 r_dihedral_angle_3_deg 14.501 r_dihedral_angle_1_deg 6.389 r_long_range_B_refined 5.092 r_long_range_B_other 5.053 r_scangle_other 3.783 r_mcangle_it 2.825 r_mcangle_other 2.825 r_scbond_it 2.543
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.286 r_dihedral_angle_4_deg 20.393 r_dihedral_angle_3_deg 14.501 r_dihedral_angle_1_deg 6.389 r_long_range_B_refined 5.092 r_long_range_B_other 5.053 r_scangle_other 3.783 r_mcangle_it 2.825 r_mcangle_other 2.825 r_scbond_it 2.543 r_scbond_other 2.543 r_mcbond_it 2.004 r_mcbond_other 2.004 r_angle_refined_deg 1.637 r_angle_other_deg 1.203 r_chiral_restr 0.094 r_bond_refined_d 0.015 r_gen_planes_refined 0.009 r_bond_other_d 0.007 r_gen_planes_other 0.006 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15225 Nucleic Acid Atoms Solvent Atoms 723 Heterogen Atoms 268
Software Software Software Name Purpose REFMAC refinement XDS data reduction PHASER phasing