5AC0

ovis aries Aldehyde Dehydrogenase 1A1 in complex with a duocarmycin analog


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4X4LPDB ENTRY 4X4L

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.5931.9

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 93.556α = 90
b = 150.644β = 90
c = 80.677γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2014-05-23MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SASLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.950.299.80.126.89080510.56
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.91.9698.11.021.436

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 4X4L1.950.2185923452599.940.155610.153430.19668RANDOM25.631
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
3.52-1.44-2.08
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.941
r_dihedral_angle_4_deg18.886
r_dihedral_angle_3_deg14.114
r_dihedral_angle_1_deg6.704
r_scbond_it3.174
r_mcangle_it2.529
r_mcbond_it1.929
r_mcbond_other1.929
r_angle_refined_deg1.887
r_angle_other_deg0.893
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.941
r_dihedral_angle_4_deg18.886
r_dihedral_angle_3_deg14.114
r_dihedral_angle_1_deg6.704
r_scbond_it3.174
r_mcangle_it2.529
r_mcbond_it1.929
r_mcbond_other1.929
r_angle_refined_deg1.887
r_angle_other_deg0.893
r_chiral_restr0.112
r_bond_refined_d0.019
r_gen_planes_refined0.009
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_it
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7608
Nucleic Acid Atoms
Solvent Atoms698
Heterogen Atoms134

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
PHASERphasing