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Crystal structure of the AtTTM3 product complex with two orthophosphates and manganese ions (form B)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 0.1 M BIS TRIS PH 7.0, 20 % PEG3350
Crystal Properties Matthews coefficient Solvent content 2.16 42.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.331 α = 90 b = 33.811 β = 94.4 c = 71.812 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2013-02-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.67 43.2 94.4 0.08 9.5 4.1 23035 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.67 1.77 76.8 0.62 1.75 2.95
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 1.67 43.2 21931 1097 94.4 0.18117 0.17915 0.1862 0.22223 0.2281 RANDOM 29.197
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.93 0.52 -0.55 -0.45
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.597 r_sphericity_free 18.861 r_dihedral_angle_4_deg 16.072 r_dihedral_angle_3_deg 12.733 r_dihedral_angle_1_deg 6.284 r_sphericity_bonded 3.981 r_angle_refined_deg 1.436 r_mcangle_it 1.137 r_scbond_it 0.947 r_angle_other_deg 0.871
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.597 r_sphericity_free 18.861 r_dihedral_angle_4_deg 16.072 r_dihedral_angle_3_deg 12.733 r_dihedral_angle_1_deg 6.284 r_sphericity_bonded 3.981 r_angle_refined_deg 1.436 r_mcangle_it 1.137 r_scbond_it 0.947 r_angle_other_deg 0.871 r_mcbond_it 0.86 r_mcbond_other 0.86 r_rigid_bond_restr 0.765 r_chiral_restr 0.076 r_bond_refined_d 0.009 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1650 Nucleic Acid Atoms Solvent Atoms 136 Heterogen Atoms 13
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling