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SAD structure of Thermolysin obtained by multi crystal data collection
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 92.874 α = 90 b = 92.874 β = 90 c = 129.167 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.27 19.88 92 0.09 41.3 80728 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 1.27 20 76712 3958 92.08 0.14462 0.14349 0.1587 0.1664 0.1752 RANDOM 17.501
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.07 -0.04 -0.07 0.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.055 r_dihedral_angle_4_deg 20.643 r_sphericity_free 14.123 r_dihedral_angle_3_deg 12.149 r_dihedral_angle_1_deg 5.519 r_sphericity_bonded 4.778 r_rigid_bond_restr 2.732 r_scbond_it 1.469 r_angle_refined_deg 1.318 r_mcangle_it 1.105
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.055 r_dihedral_angle_4_deg 20.643 r_sphericity_free 14.123 r_dihedral_angle_3_deg 12.149 r_dihedral_angle_1_deg 5.519 r_sphericity_bonded 4.778 r_rigid_bond_restr 2.732 r_scbond_it 1.469 r_angle_refined_deg 1.318 r_mcangle_it 1.105 r_angle_other_deg 1.085 r_mcbond_it 0.957 r_mcbond_other 0.933 r_chiral_restr 0.083 r_bond_refined_d 0.007 r_gen_planes_other 0.007 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2432 Nucleic Acid Atoms Solvent Atoms 326 Heterogen Atoms 36
Software Software Software Name Purpose REFMAC refinement