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Structural insights into the recognition of cisplatin and AAF-dG lesions by Rad14 (XPA)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 0.18 M AMMONIUM NITRATE AND 40% 2-METHYL- 1,3,-PROPANEDIOL
Crystal Properties Matthews coefficient Solvent content 2.55 51.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.727 α = 90 b = 53.727 β = 90 c = 130.551 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 65.3 99.8 0.08 10.7 7.4 34232 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 95.6 0.89 2.6 7.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 53.73 32435 1701 99.8 0.21109 0.20956 0.24076 0.2334 RANDOM 47.76
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.26 1.26 -2.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.515 r_dihedral_angle_3_deg 17.742 r_dihedral_angle_4_deg 13.482 r_dihedral_angle_1_deg 6 r_mcangle_it 2.683 r_angle_refined_deg 2.154 r_angle_other_deg 1.734 r_mcbond_other 1.653 r_mcbond_it 1.652 r_scbond_it 1.651
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.515 r_dihedral_angle_3_deg 17.742 r_dihedral_angle_4_deg 13.482 r_dihedral_angle_1_deg 6 r_mcangle_it 2.683 r_angle_refined_deg 2.154 r_angle_other_deg 1.734 r_mcbond_other 1.653 r_mcbond_it 1.652 r_scbond_it 1.651 r_chiral_restr 0.463 r_bond_refined_d 0.018 r_gen_planes_refined 0.011 r_bond_other_d 0.004 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1875 Nucleic Acid Atoms 618 Solvent Atoms 43 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing