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Structure of Rad14 in complex with cisplatin containing DNA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 0.2M MAGNESIUM ACETATE 0.1M MES PH 6.5 30% MPD
Crystal Properties Matthews coefficient Solvent content 2.15 42.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.421 α = 90 b = 54.421 β = 90 c = 130.773 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2013-07-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 54.4 99.7 0.15 9.1 4.2 9402 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.9 98.1 1.33 1.2 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT NONE 2.8 54.42 8935 455 99.78 0.21462 0.21255 0.2094 0.25554 0.2479 RANDOM 55.729
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2 2 -3.99
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.092 r_dihedral_angle_4_deg 22.341 r_dihedral_angle_3_deg 18.834 r_dihedral_angle_1_deg 6.337 r_angle_other_deg 1.807 r_angle_refined_deg 1.57 r_mcangle_it 1.477 r_scbond_it 0.881 r_mcbond_it 0.842 r_mcbond_other 0.841
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.092 r_dihedral_angle_4_deg 22.341 r_dihedral_angle_3_deg 18.834 r_dihedral_angle_1_deg 6.337 r_angle_other_deg 1.807 r_angle_refined_deg 1.57 r_mcangle_it 1.477 r_scbond_it 0.881 r_mcbond_it 0.842 r_mcbond_other 0.841 r_chiral_restr 0.106 r_bond_refined_d 0.012 r_bond_other_d 0.012 r_gen_planes_refined 0.006 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1876 Nucleic Acid Atoms 1682 Solvent Atoms Heterogen Atoms 14
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing