ATOMIC COORDINATES FOR GP6, GP15, GP16, GP17 WERE OBTAINED FROM PDB FILES 2JES (LEBEDEV ET AL., EMBO J., 2007, 26, 1984), 2KBZ, 2KCA (LHUILLIER ET AL. ...
ATOMIC COORDINATES FOR GP6, GP15, GP16, GP17 WERE OBTAINED FROM PDB FILES 2JES (LEBEDEV ET AL., EMBO J., 2007, 26, 1984), 2KBZ, 2KCA (LHUILLIER ET AL., PROC.NATL.ACAD.SCI. USA, 2009, 106, 8507), 2LFP (CHAGOT ET AL., PROTEINS, 2012, 80, 319), CORRESPONDIGLY, AND DOCKED INTO EM ELECTRON DENSITY MAP USING FLEXIBLE FIT. ATOMIC COORDINATES FOR MISSING DOMAINS OF GP6 AND GP17.1. WERE MODELLED USING I-TASSER PROTEIN STRUCTURE PREDICTION SERVER (Y ZHANG, BMC BIOINFORMATICS, 2008, 9, 40) AND DOCKED INTO EM ELECTRON DENSITY MAP USING FLEXIBLE FIT. SUBMISSION BASED ON EXPERIMENTAL DATA FROM EMDB EMD-2993. (DEPOSITION ID: 13331). SEQUENCE N-TERMINAL RESIDUES 1-28 AND C-TERMINAL RESIDUES 468-509 WERE NOT INCLUDED IN THE ATOMIC COORDINATES USED FOR DOCKING DUE TO DIFFICULTIES TRACING CORRESPONDING DENSITIES IN THE EM MAP. ASN 365 IS SUBSTITUTED FOR LYS, SAME AS IN PDB COORDINATE FILE 2JES, WHICH WAS USED AS A STARTING POINT FOR THE FITTING. N-TERMINAL RESIDUES 1-3 ARE OMITTED FROM THE DOCKED GP15 SEQUENCE. PRO 6 IS SUBSTITUTED WITH ARG IN GP16 SEQUENCE, AS IT IS IN THE PDB COORDINATE FILE 2KCA USED FOR FITTING N-TERMINAL RESIDUE 1 IS MISSING FROM THE DOCKED GP17 SEQUENCE. N-TERMINAL RESIDUES 1-8 AND C-TERMINAL RESIDUES 170-177 ARE MISSING FROM THE DOCKED GP17.1 SEQUENCE DUE TO DIFFICULTIES TRACING CORRESPONDING DENSITIES IN THE EM MAP.
