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N-terminal thioester domain of fibronectin-binding protein SfbI from Streptococcus pyogenes
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 0.1 M ZINC ACETATE, 0.1 M HEPES PH 7.5, 14% PEG 8000
Crystal Properties Matthews coefficient Solvent content 3 59.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 165.12 α = 90 b = 165.12 β = 90 c = 42.52 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2014-07-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 52.22 99.9 0.05 18.7 9.2 126127 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.35 1.39 99.1 0.75 2.7 9.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 1.35 52.22 119869 6244 99.88 0.13173 0.13069 0.1415 0.15269 0.1651 RANDOM 23.639
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.17 0.17 -0.35
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 54.712 r_dihedral_angle_2_deg 38.936 r_sphericity_bonded 17.496 r_dihedral_angle_4_deg 16.07 r_dihedral_angle_3_deg 11.067 r_dihedral_angle_1_deg 5.713 r_scbond_it 3.519 r_rigid_bond_restr 3.349 r_mcangle_it 2.986 r_mcbond_it 2.509
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 54.712 r_dihedral_angle_2_deg 38.936 r_sphericity_bonded 17.496 r_dihedral_angle_4_deg 16.07 r_dihedral_angle_3_deg 11.067 r_dihedral_angle_1_deg 5.713 r_scbond_it 3.519 r_rigid_bond_restr 3.349 r_mcangle_it 2.986 r_mcbond_it 2.509 r_mcbond_other 2.502 r_angle_refined_deg 1.528 r_angle_other_deg 1.101 r_chiral_restr 0.097 r_bond_refined_d 0.012 r_gen_planes_refined 0.007 r_gen_planes_other 0.003 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3296 Nucleic Acid Atoms Solvent Atoms 457 Heterogen Atoms 13
Software Software Software Name Purpose REFMAC refinement xia2 data reduction xia2 data scaling PHENIX phasing