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N-terminal thioester domain of surface protein from Clostridium perfringens, Cys138Ala mutant
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 0.2 M POTASSIUM THIOCYANATE, 0.1 M BIS -TRIS PROPANE PH 6.5, 20% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.23 44.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 98.42 α = 90 b = 110.72 β = 90 c = 68.77 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2013-09-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 44.97 100 0.05 31.6 18.1 99659 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.64 99.9 0.74 4.3 18.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 1.6 44.97 94622 4972 99.96 0.17906 0.17747 0.1872 0.21015 0.2177 RANDOM 24.329
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.06 -0.08 0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.17 r_dihedral_angle_4_deg 13.311 r_dihedral_angle_3_deg 11.725 r_dihedral_angle_1_deg 5.901 r_long_range_B_refined 4.423 r_long_range_B_other 4.423 r_scangle_other 2.68 r_scbond_it 1.851 r_scbond_other 1.849 r_mcangle_it 1.659
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.17 r_dihedral_angle_4_deg 13.311 r_dihedral_angle_3_deg 11.725 r_dihedral_angle_1_deg 5.901 r_long_range_B_refined 4.423 r_long_range_B_other 4.423 r_scangle_other 2.68 r_scbond_it 1.851 r_scbond_other 1.849 r_mcangle_it 1.659 r_mcangle_other 1.658 r_angle_refined_deg 1.567 r_mcbond_it 1.089 r_mcbond_other 1.089 r_angle_other_deg 0.787 r_chiral_restr 0.09 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5565 Nucleic Acid Atoms Solvent Atoms 372 Heterogen Atoms 28
Software Software Software Name Purpose REFMAC refinement xia2 data reduction xia2 data scaling PHENIX phasing