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X-ray crystal structure of selenomethionine-labelled V110M mutant of chitosan-binding module 1 derived from chitosanase/glucanase from Paenibacillus sp. IK-5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 Sodium fluoride, PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.12 41.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 28.233 α = 90 b = 65.329 β = 97.21 c = 69.887 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD ADSC QUANTUM 270 2014-11-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-17A 0.97865 Photon Factory BL-17A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 50 99.8 28.4 6.1 78378
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.22 97 0.222 4.5 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.2 47.55 75932 1994 99.15 0.20934 0.2083 0.24921 0.2598 RANDOM 9.041
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.31 -0.33 -0.1 -0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.703 r_dihedral_angle_4_deg 24.16 r_dihedral_angle_3_deg 11.338 r_dihedral_angle_1_deg 7.639 r_long_range_B_refined 5.465 r_long_range_B_other 4.852 r_angle_refined_deg 2.466 r_scangle_other 2.388 r_mcangle_it 1.762 r_mcangle_other 1.762
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.703 r_dihedral_angle_4_deg 24.16 r_dihedral_angle_3_deg 11.338 r_dihedral_angle_1_deg 7.639 r_long_range_B_refined 5.465 r_long_range_B_other 4.852 r_angle_refined_deg 2.466 r_scangle_other 2.388 r_mcangle_it 1.762 r_mcangle_other 1.762 r_scbond_it 1.67 r_scbond_other 1.669 r_mcbond_it 1.272 r_mcbond_other 1.27 r_angle_other_deg 1.029 r_chiral_restr 0.155 r_bond_refined_d 0.03 r_gen_planes_refined 0.014 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2056 Nucleic Acid Atoms Solvent Atoms 564 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data scaling PHENIX phasing Coot model building