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Crystal Structure of EncM (crystallized with 4 mM NADPH)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BVG PDB entry 2BVG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 277.15 5 mg/mL EncM in 4 mM NADPH, 5 mM TES sodium, pH 7.7, 10% v/v glycerol, reservoir: 0.1 M HEPES sodium, pH 7.5, 0.2 M calcium acetate, 20% w/v PEG3350
Crystal Properties Matthews coefficient Solvent content 2.39 48.44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 166.06 α = 90 b = 175.02 β = 90 c = 132.29 γ = 90
Symmetry Space Group C 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2012-07-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 1.0 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.67 29.69 98.35 0.155 28.8 6.6 219275
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2BVG 1.67 29.69 204554 12765 98.35 0.1874 0.1847 0.1824 0.2298 0.227 RANDOM 23.32
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.462 r_dihedral_angle_4_deg 16.535 r_dihedral_angle_3_deg 14.389 r_dihedral_angle_1_deg 6.725 r_angle_refined_deg 2.107 r_chiral_restr 0.159 r_bond_refined_d 0.021 r_gen_planes_refined 0.014
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14001 Nucleic Acid Atoms Solvent Atoms 2120 Heterogen Atoms 212
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction MOSFLM data reduction MOLREP phasing