X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1EVAPORATION7298PEG3350, sodium chloride, 100mM BisTris Buffer, ytterbium chloride, sitting drop Ligand soak overnight
Crystal Properties
Matthews coefficientSolvent content
2.2545.42

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 109.054α = 90
b = 109.054β = 90
c = 83.225γ = 90
Symmetry
Space GroupP 4 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315r2012-03-05MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.98APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.850990.08222.711.744544
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.831000.594.711.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT1.85044544237599.650.187020.185010.22415RANDOM32.278
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.42-0.420.83
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.653
r_dihedral_angle_4_deg14.903
r_dihedral_angle_3_deg13.211
r_dihedral_angle_1_deg5.642
r_long_range_B_refined5.084
r_long_range_B_other5.084
r_scangle_other1.328
r_angle_refined_deg1.259
r_mcangle_other0.87
r_mcangle_it0.869
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.653
r_dihedral_angle_4_deg14.903
r_dihedral_angle_3_deg13.211
r_dihedral_angle_1_deg5.642
r_long_range_B_refined5.084
r_long_range_B_other5.084
r_scangle_other1.328
r_angle_refined_deg1.259
r_mcangle_other0.87
r_mcangle_it0.869
r_scbond_it0.848
r_scbond_other0.848
r_angle_other_deg0.745
r_mcbond_it0.537
r_mcbond_other0.533
r_chiral_restr0.073
r_bond_refined_d0.007
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3754
Nucleic Acid Atoms
Solvent Atoms241
Heterogen Atoms35

Software

Software
Software NamePurpose
REFMACrefinement