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Structure of human ALDH1A1 with inhibitor CM026
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 7 298 PEG3350, sodium chloride, 100mM BisTris Buffer, ytterbium chloride, sitting drop
Ligand soak overnight
Crystal Properties Matthews coefficient Solvent content 2.25 45.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 109.054 α = 90 b = 109.054 β = 90 c = 83.225 γ = 90
Symmetry Space Group P 4 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2012-03-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.98 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 99 0.082 22.7 11.7 44544
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.83 100 0.59 4.7 11.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.8 50 44544 2375 99.65 0.18702 0.18501 0.1924 0.22415 0.2224 RANDOM 32.278
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.42 -0.42 0.83
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.653 r_dihedral_angle_4_deg 14.903 r_dihedral_angle_3_deg 13.211 r_dihedral_angle_1_deg 5.642 r_long_range_B_refined 5.084 r_long_range_B_other 5.084 r_scangle_other 1.328 r_angle_refined_deg 1.259 r_mcangle_other 0.87 r_mcangle_it 0.869
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.653 r_dihedral_angle_4_deg 14.903 r_dihedral_angle_3_deg 13.211 r_dihedral_angle_1_deg 5.642 r_long_range_B_refined 5.084 r_long_range_B_other 5.084 r_scangle_other 1.328 r_angle_refined_deg 1.259 r_mcangle_other 0.87 r_mcangle_it 0.869 r_scbond_it 0.848 r_scbond_other 0.848 r_angle_other_deg 0.745 r_mcbond_it 0.537 r_mcbond_other 0.533 r_chiral_restr 0.073 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3754 Nucleic Acid Atoms Solvent Atoms 241 Heterogen Atoms 35
Software Software Software Name Purpose REFMAC refinement