X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 3HPAPDB ENTRY 3HPA

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17.1THE PROTEIN WAS CONCENTRATED TO 11.4 MG/ML AND SET UP IN A 1:1 RATIO, 150 NL PLUS 150 NL, WITH 50 MM HEPES PH 7.1, 2.7% DIETHYLENE GLYCOL, 5.5% PEG 8000
Crystal Properties
Matthews coefficientSolvent content
2.5656

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 117.487α = 90
b = 195.564β = 90
c = 283.882γ = 90
Symmetry
Space GroupP 2 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCD2014-05-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAUSTRALIAN SYNCHROTRON BEAMLINE MX2Australian SynchrotronMX2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.849.51000.238.87.5161122
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.82.851000.912.67.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 3HPA2.8161.05153180786499.950.18890.187420.21794RANDOM29.473
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.3-1.422.72
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.234
r_dihedral_angle_4_deg19.997
r_dihedral_angle_3_deg16.441
r_dihedral_angle_1_deg5.569
r_mcangle_it2.761
r_scbond_it2.403
r_angle_other_deg2
r_mcbond_it1.665
r_mcbond_other1.665
r_angle_refined_deg1.505
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.234
r_dihedral_angle_4_deg19.997
r_dihedral_angle_3_deg16.441
r_dihedral_angle_1_deg5.569
r_mcangle_it2.761
r_scbond_it2.403
r_angle_other_deg2
r_mcbond_it1.665
r_mcbond_other1.665
r_angle_refined_deg1.505
r_chiral_restr0.079
r_bond_refined_d0.014
r_gen_planes_refined0.007
r_gen_planes_other0.004
r_bond_other_d0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_it
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms44161
Nucleic Acid Atoms
Solvent Atoms161
Heterogen Atoms110

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing