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Crystal structure of DNA/RNA duplex containing 2'-4'-BNA-NC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 Na Cacodylate, NaCl, Hexammine Cobalt, MPD
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.92 α = 90 b = 58.96 β = 90 c = 102.44 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2013-05-25 M SINGLE WAVELENGTH 2 2 x-ray 100 CCD ADSC QUANTUM 315r 2013-05-25 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-17A 0.98 Photon Factory BL-17A 2 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-17A 1.60465, 1.60830, 0.98 Photon Factory BL-17A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 25.61 98 0.056 17.1 6.82 21282
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.55 98 0.28 5.4 6.98 2110
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MAD FREE R-VALUE 1.5 25.61 21282 2111 98 0.1982 0.1958 0.2156 0.2146 22.3891
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.441 0.004 -0.445
RMS Deviations Key Refinement Restraint Deviation c_angle_d 2.013 c_scangle_it 1.516 c_scbond_it 1.153 c_bond_d 0.019 c_mcbond_it c_mcangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms Nucleic Acid Atoms 780 Solvent Atoms 355 Heterogen Atoms 117
Software Software Software Name Purpose CrystalClear data reduction PHENIX phasing CNS refinement PDB_EXTRACT data extraction SOLVE model building d*TREK data scaling SOLVE phasing