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FAN1 Nuclease bound to 5' phosphorylated p(dT) single flap DNA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 hanging drop vapor diffusion 7 277 PEG 3350, NaCl, pH 7.0, hanging drop vapor diffusion, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.27 62.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 97.697 α = 90 b = 110.989 β = 103.75 c = 105.427 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2013-02-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 0.97925 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.25 70 98.8 0.114 6.1 5 33197 32799
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.25 3.37 98.1 0.704 4.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3.25 50 33277 31391 1323 94.33 0.22744 0.22576 0.2226 0.26526 0.2643 RANDOM 103.089
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.51 4.48 -0.37 0.7
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.344 r_dihedral_angle_3_deg 19.901 r_dihedral_angle_4_deg 17.643 r_dihedral_angle_1_deg 5.855 r_mcangle_it 3.194 r_scbond_it 1.776 r_mcbond_it 1.775 r_angle_refined_deg 1.193 r_chiral_restr 0.083 r_bond_refined_d 0.007
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.344 r_dihedral_angle_3_deg 19.901 r_dihedral_angle_4_deg 17.643 r_dihedral_angle_1_deg 5.855 r_mcangle_it 3.194 r_scbond_it 1.776 r_mcbond_it 1.775 r_angle_refined_deg 1.193 r_chiral_restr 0.083 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9977 Nucleic Acid Atoms 1592 Solvent Atoms Heterogen Atoms 2
Software Software Software Name Purpose SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction ADSC data collection DENZO data reduction SHARP phasing