4O9U

Mechanism of transhydrogenase coupling proton translocation and hydride transfer


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP29850 mM MgCl2, 0.5 M trimethylamine N-oxide, 26% polyethylenglycol 400, 2% octyl glucoside, 0.1mM NADP, VAPOR DIFFUSION, SITTING DROP, temperature 298.0K
Crystal Properties
Matthews coefficientSolvent content
3.9368.7

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 175.331α = 90
b = 160.59β = 128.36
c = 139.624γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315rMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL7-11.12709SSRLBL7-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
16.92638.998.350154922

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT6.92638.9469422898.110.215980.212710.28372RANDOM160.054
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-21.34-9.66-16.3723.52
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.52
r_long_range_B_refined23.161
r_dihedral_angle_3_deg19.273
r_dihedral_angle_4_deg14.192
r_mcangle_it9.321
r_mcbond_it5.088
r_dihedral_angle_1_deg4.964
r_scbond_it3.848
r_angle_refined_deg1.102
r_chiral_restr0.064
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.52
r_long_range_B_refined23.161
r_dihedral_angle_3_deg19.273
r_dihedral_angle_4_deg14.192
r_mcangle_it9.321
r_mcbond_it5.088
r_dihedral_angle_1_deg4.964
r_scbond_it3.848
r_angle_refined_deg1.102
r_chiral_restr0.064
r_bond_refined_d0.006
r_gen_planes_refined0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms13434
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms184

Software

Software
Software NamePurpose
Blu-Icedata collection
PHASERphasing
REFMACrefinement
XDSdata reduction
SCALAdata scaling