4N1B

STRUCTURE OF KEAP1 KELCH DOMAIN WITH(1S,2R)-2-[(1S)-1-[(1-oxo-2,3-dihydro-1H-isoindol-2-Yl)methyl]-1,2,3,4-tetrahydroisoquinoline-2-Carbonyl]cyclohexane-1-carboxylic acid


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP2961 UL OF PROTEIN AT 12 MG/ML IN 20 MM TRIS-HCL PH 7.5, 5 MM DTT, 5 MM COMPOUND 1 + 2 UL OF 2.15 M SODIUM ACETATE , VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 296K
Crystal Properties
Matthews coefficientSolvent content
3.2161.63

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 76.18α = 90
b = 127.13β = 90
c = 131.11γ = 90
Symmetry
Space GroupP 21 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6MmIRROR2012-10-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I240.96861DiamondI24

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.5532.6899.9422424224222
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.5599.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.5532.674224238651203596.250.245730.245730.243580.28692RANDOM48.479
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.170.020.15
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.806
r_dihedral_angle_4_deg18.323
r_dihedral_angle_3_deg14.896
r_dihedral_angle_1_deg5.993
r_long_range_B_other4.37
r_long_range_B_refined4.362
r_mcangle_it2.845
r_mcangle_other2.845
r_scangle_other2.316
r_mcbond_it1.576
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.806
r_dihedral_angle_4_deg18.323
r_dihedral_angle_3_deg14.896
r_dihedral_angle_1_deg5.993
r_long_range_B_other4.37
r_long_range_B_refined4.362
r_mcangle_it2.845
r_mcangle_other2.845
r_scangle_other2.316
r_mcbond_it1.576
r_mcbond_other1.575
r_scbond_it1.259
r_scbond_other1.259
r_angle_refined_deg1.069
r_angle_other_deg0.674
r_chiral_restr0.058
r_bond_refined_d0.005
r_gen_planes_refined0.003
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6593
Nucleic Acid Atoms
Solvent Atoms28
Heterogen Atoms104

Software

Software
Software NamePurpose
GDAdata collection
PHASERphasing
REFMACrefinement
XDSdata reduction
xia2data scaling