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Crystal structure of an essential yeast splicing factor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 298 13% PEG4000, 0.1 M sodium acetate, 0.1 M magnesium acetate, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
Crystal Properties Matthews coefficient Solvent content 3.77 67.35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 139.315 α = 90 b = 139.315 β = 90 c = 86.737 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2011-02-28 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD ADSC QUANTUM 315r 2011-05-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.1159 ALS 8.3.1 2 SYNCHROTRON ALS BEAMLINE 8.3.1 1.2146 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.87 98.511 99.8 0.085 10.5 7.7 70597 70404
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.87 1.97 100 0.945 1.7 7.6
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD 1.87 42.831 1.34 70394 1996 99.46 0.1855 0.1845 0.1778 0.2201 0.2073
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -5.9268 -5.9268 11.8536
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 13.007 f_angle_d 1.605 f_chiral_restr 0.126 f_bond_d 0.018 f_plane_restr 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3262 Nucleic Acid Atoms Solvent Atoms 321 Heterogen Atoms 5
Software Software Software Name Purpose Blu-Ice data collection PHASER phasing PHENIX refinement MOSFLM data reduction SCALA data scaling