4J7Z
Thermus thermophilus DNAJ J- and G/F-DOMAINS
X-RAY DIFFRACTION - EPR
Crystallization
Crystalization Experiments | ||||
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ID | Method | pH | Temperature | Details |
1 | VAPOR DIFFUSION, HANGING DROP | PEG1500 15%, 0.1 M STRONTIUM CHLORIDE , VAPOR DIFFUSION, HANGING DROP |
Crystal Properties | |
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Matthews coefficient | Solvent content |
1.98 | 37.95 |
Crystal Data
Unit Cell | |
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Length ( Å ) | Angle ( ˚ ) |
a = 85.99 | α = 90 |
b = 85.99 | β = 90 |
c = 72.72 | γ = 120 |
Symmetry | |
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Space Group | P 31 |
Diffraction
Diffraction Experiment | ||||||||||||||
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ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol | |||||
1 | 1 | x-ray | 90 | CCD | MARMOSAIC 225 mm CCD | LN2 COOLED FIXED-EXIT SI(111) MONOCHROMATOR, DYNAMICALLY BENDABLE MIRROR | 2006-02-01 | M | SINGLE WAVELENGTH |
Radiation Source | |||||
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ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
1 | SYNCHROTRON | SLS BEAMLINE X10SA | SLS | X10SA |
Data Collection
Overall | |||||||||||||||||||
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | R Merge I (Observed) | R Sym I (Observed) | Rrim I (All) | Rpim I (All) | CC (Half) | R Split (All) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot | |||
1 | 1.64 | 40 | 97.7 | 0.066 | 12.5 | 72046 |
Highest Resolution Shell | |||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID # | Resolution (High) | Resolution (Low) | Percent Possible (All) | R Merge I (Observed) | R-Sym I (Observed) | Rrim I (All) | Rpim I (All) | CC (Half) | R Split (All) | Mean I Over Sigma (Observed) | Redundancy | Number Unique Reflections (All) | |||||||
1 | 1.64 | 1.7 | 0.353 | 2.8 |
Refinement
Statistics | |||||||||||||||||||
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Diffraction ID | Structure Solution Method | Resolution (High) | Resolution (Low) | Cut-off Sigma (I) | Cut-off Sigma (F) | Number Reflections (All) | Number Reflections (Observed) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Factor (All) | R-Factor (Observed) | R-Work | R-Free | R-Free Selection Details | Mean Isotropic B | ||||
X-RAY DIFFRACTION | RIPAS | 1.64 | 37.24 | 68483 | 3545 | 97.8 | 0.216 | 0.214 | 0.246 | THIN RESOLUTION SHELLS | 36.039 |
Temperature Factor Modeling | ||||||
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Anisotropic B[1][1] | Anisotropic B[1][2] | Anisotropic B[1][3] | Anisotropic B[2][2] | Anisotropic B[2][3] | Anisotropic B[3][3] | |
-0.1 | -0.05 | -0.1 | 0.16 |
RMS Deviations | |
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Key | Refinement Restraint Deviation |
r_dihedral_angle_2_deg | 31.289 |
r_dihedral_angle_3_deg | 13.572 |
r_dihedral_angle_1_deg | 10.898 |
r_dihedral_angle_4_deg | 10.888 |
r_scangle_it | 4.572 |
r_mcangle_it | 3.961 |
r_angle_other_deg | 3.583 |
r_scbond_it | 3.208 |
r_mcbond_it | 2.821 |
r_angle_refined_deg | 1.174 |
Non-Hydrogen Atoms Used in Refinement | |
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Non-Hydrogen Atoms | Number |
Protein Atoms | 4918 |
Nucleic Acid Atoms | |
Solvent Atoms | 342 |
Heterogen Atoms | 18 |
Software
Software | |
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Software Name | Purpose |
SHARP | phasing |
REFMAC | refinement |
XDS | data reduction |
XSCALE | data scaling |